H5Dpkg.h

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/* * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * *
 * Copyright by The HDF Group.                                               *
 * Copyright by the Board of Trustees of the University of Illinois.         *
 * All rights reserved.                                                      *
 *                                                                           *
 * This file is part of HDF5.  The full HDF5 copyright notice, including     *
 * terms governing use, modification, and redistribution, is contained in    *
 * the COPYING file, which can be found at the root of the source code       *
 * distribution tree, or in https://support.hdfgroup.org/ftp/HDF5/releases.  *
 * If you do not have access to either file, you may request a copy from     *
 * help@hdfgroup.org.                                                        *
 * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * */
 
/*
 * Programmer:    Quincey Koziol <koziol@ncsa.uiuc.edu>
 *        Monday, April 14, 2003
 *
 * Purpose:    This file contains declarations which are visible only within
 *        the H5D package.  Source files outside the H5D package should
 *        include H5Dprivate.h instead.
 */
#if !(defined H5D_FRIEND || defined H5D_MODULE)
#error "Do not include this file outside the H5D package!"
#endif
 
#ifndef _H5Dpkg_H
#define _H5Dpkg_H
 
/* Get package's private header */
#include "H5Dprivate.h"
 
/* Other private headers needed by this file */
#include "H5ACprivate.h"        /* Metadata cache            */
#include "H5B2private.h"        /* v2 B-trees                */
#include "H5Fprivate.h"         /* File access               */
#include "H5Gprivate.h"         /* Groups                    */
#include "H5SLprivate.h"        /* Skip lists                */
#include "H5Tprivate.h"         /* Datatypes                 */
 
/**************************/
/* Package Private Macros */
/**************************/
 
/* Set the minimum object header size to create objects with */
#define H5D_MINHDR_SIZE 256
 
/* [Simple] Macro to construct a H5D_io_info_t from it's components */
#define H5D_BUILD_IO_INFO_WRT(io_info, ds, str, buf)                    \
    (io_info)->dset = ds;                                               \
    (io_info)->f_sh = H5F_SHARED((ds)->oloc.file);                      \
    (io_info)->store = str;                                             \
    (io_info)->op_type = H5D_IO_OP_WRITE;                               \
    (io_info)->u.wbuf = buf
#define H5D_BUILD_IO_INFO_RD(io_info, ds, str, buf)                     \
    (io_info)->dset = ds;                                               \
    (io_info)->f_sh = H5F_SHARED((ds)->oloc.file);                      \
    (io_info)->store = str;                                             \
    (io_info)->op_type = H5D_IO_OP_READ;                                \
    (io_info)->u.rbuf = buf
 
/* Flags for marking aspects of a dataset dirty */
#define H5D_MARK_SPACE  0x01
#define H5D_MARK_LAYOUT  0x02
 
/* Default creation parameters for chunk index data structures */
/* See H5O_layout_chunk_t */
 
/* Fixed array creation values */
#define H5D_FARRAY_CREATE_PARAM_SIZE           1    /* Size of the creation parameters in bytes */
#define H5D_FARRAY_MAX_DBLK_PAGE_NELMTS_BITS   10   /* i.e. 1024 elements per data block page */
 
/* Extensible array creation values */
#define H5D_EARRAY_CREATE_PARAM_SIZE           5    /* Size of the creation parameters in bytes */
#define H5D_EARRAY_MAX_NELMTS_BITS             32   /* i.e. 4 giga-elements */
#define H5D_EARRAY_IDX_BLK_ELMTS               4
#define H5D_EARRAY_SUP_BLK_MIN_DATA_PTRS       4
#define H5D_EARRAY_DATA_BLK_MIN_ELMTS          16
#define H5D_EARRAY_MAX_DBLOCK_PAGE_NELMTS_BITS     10     /* i.e. 1024 elements per data block page */
 
/* v2 B-tree creation values for raw meta_size */
#define H5D_BT2_CREATE_PARAM_SIZE   6        /* Size of the creation parameters in bytes */
#define H5D_BT2_NODE_SIZE           2048
#define H5D_BT2_SPLIT_PERC          100
#define H5D_BT2_MERGE_PERC          40
 
 
/****************************/
/* Package Private Typedefs */
/****************************/
 
/* Typedef for datatype information for raw data I/O operation */
typedef struct H5D_type_info_t {
    /* Initial values */
    const H5T_t *mem_type;              /* Pointer to memory datatype */
    const H5T_t *dset_type;             /* Pointer to dataset datatype */
    H5T_path_t  *tpath;                 /* Datatype conversion path */
    hid_t src_type_id;                  /* Source datatype ID */
    hid_t dst_type_id;                  /* Destination datatype ID */
 
    /* Computed/derived values */
    size_t  src_type_size;               /* Size of source type */
    size_t  dst_type_size;               /* Size of destination type */
    size_t  max_type_size;               /* Size of largest source/destination type */
    hbool_t is_conv_noop;                /* Whether the type conversion is a NOOP */
    hbool_t is_xform_noop;               /* Whether the data transform is a NOOP */
    const H5T_subset_info_t *cmpd_subset;   /* Info related to the compound subset conversion functions */
    H5T_bkg_t need_bkg;                  /* Type of background buf needed */
    size_t   request_nelmts;             /* Requested strip mine */
    uint8_t *tconv_buf;                  /* Datatype conv buffer */
    hbool_t  tconv_buf_allocated;        /* Whether the type conversion buffer was allocated */
    uint8_t *bkg_buf;                    /* Background buffer */
    hbool_t  bkg_buf_allocated;          /* Whether the background buffer was allocated */
} H5D_type_info_t;
 
/* Forward declaration of structs used below */
struct H5D_io_info_t;
struct H5D_chunk_map_t;
typedef struct H5D_shared_t H5D_shared_t;
 
/* Function pointers for I/O on particular types of dataset layouts */
typedef herr_t (*H5D_layout_construct_func_t)(H5F_t *f, H5D_t *dset);
typedef herr_t (*H5D_layout_init_func_t)(H5F_t *f, const H5D_t *dset,
    hid_t dapl_id);
typedef hbool_t (*H5D_layout_is_space_alloc_func_t)(const H5O_storage_t *storage);
typedef hbool_t (*H5D_layout_is_data_cached_func_t)(const H5D_shared_t *shared_dset);
typedef herr_t (*H5D_layout_io_init_func_t)(const struct H5D_io_info_t *io_info,
    const H5D_type_info_t *type_info,
    hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space,
    struct H5D_chunk_map_t *cm);
typedef herr_t (*H5D_layout_read_func_t)(struct H5D_io_info_t *io_info,
    const H5D_type_info_t *type_info, hsize_t nelmts, const H5S_t *file_space,
    const H5S_t *mem_space, struct H5D_chunk_map_t *fm);
typedef herr_t (*H5D_layout_write_func_t)(struct H5D_io_info_t *io_info,
    const H5D_type_info_t *type_info, hsize_t nelmts, const H5S_t *file_space,
    const H5S_t *mem_space, struct H5D_chunk_map_t *fm);
typedef ssize_t (*H5D_layout_readvv_func_t)(const struct H5D_io_info_t *io_info,
    size_t dset_max_nseq, size_t *dset_curr_seq, size_t dset_len_arr[], hsize_t dset_offset_arr[],
    size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[]);
typedef ssize_t (*H5D_layout_writevv_func_t)(const struct H5D_io_info_t *io_info,
    size_t dset_max_nseq, size_t *dset_curr_seq, size_t dset_len_arr[], hsize_t dset_offset_arr[],
    size_t mem_max_nseq, size_t *mem_curr_seq, size_t mem_len_arr[], hsize_t mem_offset_arr[]);
typedef herr_t (*H5D_layout_flush_func_t)(H5D_t *dataset);
typedef herr_t (*H5D_layout_io_term_func_t)(const struct H5D_chunk_map_t *cm);
typedef herr_t (*H5D_layout_dest_func_t)(H5D_t *dataset);
 
/* Typedef for grouping layout I/O routines */
typedef struct H5D_layout_ops_t {
    H5D_layout_construct_func_t construct;      /* Layout constructor for new datasets */
    H5D_layout_init_func_t init;        /* Layout initializer for dataset */
    H5D_layout_is_space_alloc_func_t is_space_alloc;    /* Query routine to determine if storage is allocated */
    H5D_layout_is_data_cached_func_t is_data_cached;    /* Query routine to determine if any raw data is cached.  If routine is not present then the layout type never caches raw data. */
    H5D_layout_io_init_func_t io_init;  /* I/O initialization routine */
    H5D_layout_read_func_t ser_read;    /* High-level I/O routine for reading data in serial */
    H5D_layout_write_func_t ser_write;  /* High-level I/O routine for writing data in serial */
#ifdef H5_HAVE_PARALLEL
    H5D_layout_read_func_t par_read;    /* High-level I/O routine for reading data in parallel */
    H5D_layout_write_func_t par_write;  /* High-level I/O routine for writing data in parallel */
#endif /* H5_HAVE_PARALLEL */
    H5D_layout_readvv_func_t readvv;    /* Low-level I/O routine for reading data */
    H5D_layout_writevv_func_t writevv;  /* Low-level I/O routine for writing data */
    H5D_layout_flush_func_t flush;      /* Low-level I/O routine for flushing raw data */
    H5D_layout_io_term_func_t io_term;  /* I/O shutdown routine */
    H5D_layout_dest_func_t dest;        /* Destroy layout info */
} H5D_layout_ops_t;
 
/* Function pointers for either multiple or single block I/O access */
typedef herr_t (*H5D_io_single_read_func_t)(const struct H5D_io_info_t *io_info,
    const H5D_type_info_t *type_info,
    hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space);
typedef herr_t (*H5D_io_single_write_func_t)(const struct H5D_io_info_t *io_info,
    const H5D_type_info_t *type_info,
    hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space);
 
/* Typedef for raw data I/O framework info */
typedef struct H5D_io_ops_t {
    H5D_layout_read_func_t multi_read;          /* High-level I/O routine for reading data */
    H5D_layout_write_func_t multi_write;        /* High-level I/O routine for writing data */
    H5D_io_single_read_func_t single_read;      /* I/O routine for reading single block */
    H5D_io_single_write_func_t single_write;    /* I/O routine for writing single block */
} H5D_io_ops_t;
 
/* Typedefs for dataset storage information */
typedef struct {
    haddr_t dset_addr;      /* Address of dataset in file */
    hsize_t dset_size;      /* Total size of dataset in file */
} H5D_contig_storage_t;
 
typedef struct {
    hsize_t *scaled;        /* Scaled coordinates for a chunk */
} H5D_chunk_storage_t;
 
typedef struct {
    void    *buf;           /* Buffer for compact dataset */
    hbool_t *dirty;         /* Pointer to dirty flag to mark */
} H5D_compact_storage_t;
 
typedef union H5D_storage_t {
    H5D_contig_storage_t contig; /* Contiguous information for dataset */
    H5D_chunk_storage_t  chunk;  /* Chunk information for dataset */
    H5D_compact_storage_t compact; /* Compact information for dataset */
    H5O_efl_t   efl;            /* External file list information for dataset */
} H5D_storage_t;
 
/* Typedef for raw data I/O operation info */
typedef enum H5D_io_op_type_t {
    H5D_IO_OP_READ,         /* Read operation */
    H5D_IO_OP_WRITE         /* Write operation */
} H5D_io_op_type_t;
 
typedef struct H5D_io_info_t {
    const H5D_t *dset;          /* Pointer to dataset being operated on */
/* QAK: Delete the f_sh field when oloc has a shared file pointer? */
    H5F_shared_t *f_sh;         /* Pointer to shared file struct that dataset is within */
#ifdef H5_HAVE_PARALLEL
    MPI_Comm comm;              /* MPI communicator for file */
    hbool_t using_mpi_vfd;      /* Whether the file is using an MPI-based VFD */
#endif /* H5_HAVE_PARALLEL */
    H5D_storage_t *store;       /* Dataset storage info */
    H5D_layout_ops_t layout_ops;    /* Dataset layout I/O operation function pointers */
    H5D_io_ops_t io_ops;        /* I/O operation function pointers */
    H5D_io_op_type_t op_type;
    union {
        void *rbuf;             /* Pointer to buffer for read */
        const void *wbuf;       /* Pointer to buffer to write */
    } u;
} H5D_io_info_t;
 
 
/******************/
/* Chunk typedefs */
/******************/
 
/* Typedef for chunked dataset index operation info */
typedef struct H5D_chk_idx_info_t {
    H5F_t *f;                   /* File pointer for operation */
    const H5O_pline_t *pline;   /* I/O pipeline info */
    H5O_layout_chunk_t *layout;           /* Chunk layout description */
    H5O_storage_chunk_t *storage;         /* Chunk storage description */
} H5D_chk_idx_info_t;
 
/*
 * "Generic" chunk record.  Each chunk is keyed by the minimum logical
 * N-dimensional coordinates and the datatype size of the chunk.
 * The fastest-varying dimension is assumed to reference individual bytes of
 * the array, so a 100-element 1-D array of 4-byte integers would really be a
 * 2-D array with the slow varying dimension of size 100 and the fast varying
 * dimension of size 4 (the storage dimensionality has very little to do with
 * the real dimensionality).
 *
 * The chunk's file address, filter mask and size on disk are not key values.
 */
typedef struct H5D_chunk_rec_t {
    hsize_t     scaled[H5O_LAYOUT_NDIMS];    /* Logical offset to start */
    uint32_t    nbytes;                      /* Size of stored data */
    uint32_t    filter_mask;                 /* Excluded filters */
    haddr_t     chunk_addr;                  /* Address of chunk in file */
} H5D_chunk_rec_t;
 
/*
 * Common data exchange structure for indexed storage nodes.  This structure is
 * passed through the indexing layer to the methods for the objects
 * to which the index points.
 */
typedef struct H5D_chunk_common_ud_t {
    const H5O_layout_chunk_t  *layout;           /* Chunk layout description */
    const H5O_storage_chunk_t *storage;          /* Chunk storage description */
    const hsize_t             *scaled;           /* Scaled coordinates for a chunk */
} H5D_chunk_common_ud_t;
 
/* B-tree callback info for various operations */
typedef struct H5D_chunk_ud_t {
    /* Downward */
    H5D_chunk_common_ud_t common;       /* Common info for B-tree user data (must be first) */
 
    /* Upward */
    unsigned    idx_hint;               /* Index of chunk in cache, if present */
    H5F_block_t chunk_block;            /* Offset/length of chunk in file */
    unsigned    filter_mask;            /* Excluded filters */
    hbool_t     new_unfilt_chunk;       /* Whether the chunk just became unfiltered */
    hsize_t     chunk_idx;              /* Chunk index for EA, FA indexing */
} H5D_chunk_ud_t;
 
/* Typedef for "generic" chunk callbacks */
typedef int (*H5D_chunk_cb_func_t)(const H5D_chunk_rec_t *chunk_rec,
    void *udata);
 
/* Typedefs for chunk operations */
typedef herr_t (*H5D_chunk_init_func_t)(const H5D_chk_idx_info_t *idx_info,
    const H5S_t *space, haddr_t dset_ohdr_addr);
typedef herr_t (*H5D_chunk_create_func_t)(const H5D_chk_idx_info_t *idx_info);
typedef hbool_t (*H5D_chunk_is_space_alloc_func_t)(const H5O_storage_chunk_t *storage);
typedef herr_t (*H5D_chunk_insert_func_t)(const H5D_chk_idx_info_t *idx_info,
    H5D_chunk_ud_t *udata, const H5D_t *dset);
typedef herr_t (*H5D_chunk_get_addr_func_t)(const H5D_chk_idx_info_t *idx_info,
    H5D_chunk_ud_t *udata);
typedef herr_t (*H5D_chunk_resize_func_t)(H5O_layout_chunk_t *layout);
typedef int (*H5D_chunk_iterate_func_t)(const H5D_chk_idx_info_t *idx_info,
    H5D_chunk_cb_func_t chunk_cb, void *chunk_udata);
typedef herr_t (*H5D_chunk_remove_func_t)(const H5D_chk_idx_info_t *idx_info,
    H5D_chunk_common_ud_t *udata);
typedef herr_t (*H5D_chunk_delete_func_t)(const H5D_chk_idx_info_t *idx_info);
typedef herr_t (*H5D_chunk_copy_setup_func_t)(const H5D_chk_idx_info_t *idx_info_src,
    const H5D_chk_idx_info_t *idx_info_dst);
typedef herr_t (*H5D_chunk_copy_shutdown_func_t)(H5O_storage_chunk_t *storage_src,
    H5O_storage_chunk_t *storage_dst);
typedef herr_t (*H5D_chunk_size_func_t)(const H5D_chk_idx_info_t *idx_info,
    hsize_t *idx_size);
typedef herr_t (*H5D_chunk_reset_func_t)(H5O_storage_chunk_t *storage, hbool_t reset_addr);
typedef herr_t (*H5D_chunk_dump_func_t)(const H5O_storage_chunk_t *storage,
    FILE *stream);
typedef herr_t (*H5D_chunk_dest_func_t)(const H5D_chk_idx_info_t *idx_info);
 
/* Typedef for grouping chunk I/O routines */
typedef struct H5D_chunk_ops_t {
    hbool_t can_swim;                       /* Flag to indicate that the index supports SWMR access */
    H5D_chunk_init_func_t init;             /* Routine to initialize indexing information in memory */
    H5D_chunk_create_func_t create;         /* Routine to create chunk index */
    H5D_chunk_is_space_alloc_func_t is_space_alloc;    /* Query routine to determine if storage/index is allocated */
    H5D_chunk_insert_func_t insert;         /* Routine to insert a chunk into an index */
    H5D_chunk_get_addr_func_t get_addr;     /* Routine to retrieve address of chunk in file */
    H5D_chunk_resize_func_t resize;         /* Routine to update chunk index info after resizing dataset */
    H5D_chunk_iterate_func_t iterate;       /* Routine to iterate over chunks */
    H5D_chunk_remove_func_t remove;         /* Routine to remove a chunk from an index */
    H5D_chunk_delete_func_t idx_delete;     /* Routine to delete index & all chunks from file*/
    H5D_chunk_copy_setup_func_t copy_setup; /* Routine to perform any necessary setup for copying chunks */
    H5D_chunk_copy_shutdown_func_t copy_shutdown; /* Routine to perform any necessary shutdown for copying chunks */
    H5D_chunk_size_func_t size;             /* Routine to get size of indexing information */
    H5D_chunk_reset_func_t reset;           /* Routine to reset indexing information */
    H5D_chunk_dump_func_t dump;             /* Routine to dump indexing information */
    H5D_chunk_dest_func_t dest;             /* Routine to destroy indexing information in memory */
} H5D_chunk_ops_t;
 
/* Structure holding information about a chunk's selection for mapping */
typedef struct H5D_chunk_info_t {
    hsize_t index;              /* "Index" of chunk in dataset */
    uint32_t chunk_points;      /* Number of elements selected in chunk */
    hsize_t scaled[H5O_LAYOUT_NDIMS];   /* Scaled coordinates of chunk (in file dataset's dataspace) */
    H5S_t *fspace;              /* Dataspace describing chunk & selection in it */
    hbool_t fspace_shared;      /* Indicate that the file space for a chunk is shared and shouldn't be freed */
    H5S_t *mspace;              /* Dataspace describing selection in memory corresponding to this chunk */
    hbool_t mspace_shared;      /* Indicate that the memory space for a chunk is shared and shouldn't be freed */
} H5D_chunk_info_t;
 
/* Main structure holding the mapping between file chunks and memory */
typedef struct H5D_chunk_map_t {
    H5O_layout_t *layout;       /* Dataset layout information*/
    hsize_t nelmts;             /* Number of elements selected in file & memory dataspaces */
 
    const H5S_t *file_space;    /* Pointer to the file dataspace */
    unsigned f_ndims;           /* Number of dimensions for file dataspace */
 
    const H5S_t *mem_space;     /* Pointer to the memory dataspace */
    H5S_t *mchunk_tmpl;         /* Dataspace template for new memory chunks */
    H5S_sel_iter_t mem_iter;    /* Iterator for elements in memory selection */
    unsigned m_ndims;           /* Number of dimensions for memory dataspace */
    H5S_sel_type msel_type;     /* Selection type in memory */
    H5S_sel_type fsel_type;     /* Selection type in file */
 
    H5SL_t *sel_chunks;         /* Skip list containing information for each chunk selected */
 
    H5S_t  *single_space;       /* Dataspace for single chunk */
    H5D_chunk_info_t *single_chunk_info;  /* Pointer to single chunk's info */
    hbool_t use_single;         /* Whether I/O is on a single element */
 
    hsize_t last_index;         /* Index of last chunk operated on */
    H5D_chunk_info_t *last_chunk_info;  /* Pointer to last chunk's info */
 
    hsize_t chunk_dim[H5O_LAYOUT_NDIMS];    /* Size of chunk in each dimension */
 
#ifdef H5_HAVE_PARALLEL
    H5D_chunk_info_t **select_chunk;    /* Store the information about whether this chunk is selected or not */
#endif /* H5_HAVE_PARALLEL */
} H5D_chunk_map_t;
 
/* Cached information about a particular chunk */
typedef struct H5D_chunk_cached_t {
    hbool_t     valid;                          /*whether cache info is valid*/
    hsize_t     scaled[H5O_LAYOUT_NDIMS];       /*scaled offset of chunk*/
    haddr_t     addr;                  /*file address of chunk */
    uint32_t    nbytes;                /*size of stored data */
    hsize_t     chunk_idx;             /*index of chunk in dataset */
    unsigned    filter_mask;           /*excluded filters */
} H5D_chunk_cached_t;
 
/****************************/
/* Virtual dataset typedefs */
/****************************/
 
/* List of files held open during refresh operations */
typedef struct H5D_virtual_held_file_t {
    H5F_t *file;                                /* Pointer to file held open */
    struct H5D_virtual_held_file_t *next;       /* Pointer to next node in list */
} H5D_virtual_held_file_t;
 
/* The raw data chunk cache */
struct H5D_rdcc_ent_t;  /* Forward declaration of struct used below */
typedef struct H5D_rdcc_t {
    struct {
        unsigned    ninits;    /* Number of chunk creations        */
        unsigned    nhits;     /* Number of cache hits            */
        unsigned    nmisses;   /* Number of cache misses        */
        unsigned    nflushes;  /* Number of cache flushes        */
    } stats;
    size_t        nbytes_max;  /* Maximum cached raw data in bytes    */
    size_t        nslots;      /* Number of chunk slots allocated    */
    double        w0;          /* Chunk preemption policy          */
    struct H5D_rdcc_ent_t *head; /* Head of doubly linked list        */
    struct H5D_rdcc_ent_t *tail; /* Tail of doubly linked list        */
    struct H5D_rdcc_ent_t *tmp_head; /* Head of temporary doubly linked list.  Chunks on this list are not in the hash table (slot).  The head entry is a sentinel (does not refer to an actual chunk). */
    size_t        nbytes_used;  /* Current cached raw data in bytes */
    int           nused;        /* Number of chunk slots in use        */
    H5D_chunk_cached_t last;    /* Cached copy of last chunk information */
    struct H5D_rdcc_ent_t **slot; /* Chunk slots, each points to a chunk*/
    H5SL_t        *sel_chunks;    /* Skip list containing information for each chunk selected */
    H5S_t         *single_space;  /* Dataspace for single element I/O on chunks */
    H5D_chunk_info_t    *single_chunk_info;  /* Pointer to single chunk's info */
 
    /* Cached information about scaled dataspace dimensions */
    hsize_t             scaled_dims[H5S_MAX_RANK];          /* The scaled dim sizes */
    hsize_t             scaled_power2up[H5S_MAX_RANK];      /* The scaled dim sizes, rounded up to next power of 2 */
    unsigned            scaled_encode_bits[H5S_MAX_RANK];   /* The number of bits needed to encode the scaled dim sizes */
} H5D_rdcc_t;
 
/* The raw data contiguous data cache */
typedef struct H5D_rdcdc_t {
    unsigned char *sieve_buf;   /* Buffer to hold data sieve buffer */
    haddr_t sieve_loc;          /* File location (offset) of the data sieve buffer */
    size_t sieve_size;          /* Size of the data sieve buffer used (in bytes) */
    size_t sieve_buf_size;      /* Size of the data sieve buffer allocated (in bytes) */
    hbool_t sieve_dirty;        /* Flag to indicate that the data sieve buffer is dirty */
} H5D_rdcdc_t;
 
/*
 * A dataset is made of two layers, an H5D_t struct that is unique to
 * each instance of an opened datset, and a shared struct that is only
 * created once for a given dataset.  Thus, if a dataset is opened twice,
 * there will be two IDs and two H5D_t structs, both sharing one H5D_shared_t.
 */
struct H5D_shared_t {
    size_t              fo_count;       /* Reference count */
    hbool_t             closing;        /* Flag to indicate dataset is closing */
    hid_t               type_id;        /* ID for dataset's datatype    */
    H5T_t              *type;           /* Datatype for this dataset     */
    H5S_t              *space;          /* Dataspace of this dataset    */
    hid_t               dcpl_id;        /* Dataset creation property id */
    hid_t               dapl_id;        /* Dataset access property id */
    H5D_dcpl_cache_t    dcpl_cache;     /* Cached DCPL values */
    H5O_layout_t        layout;         /* Data layout                  */
    hbool_t             checked_filters;/* TRUE if dataset passes can_apply check */
 
    /* Cached dataspace info */
    unsigned            ndims;                        /* The dataset's dataspace rank */
    hsize_t             curr_dims[H5S_MAX_RANK];      /* The curr. size of dataset dimensions */
    hsize_t             curr_power2up[H5S_MAX_RANK];  /* The curr. dim sizes, rounded up to next power of 2 */
    hsize_t             max_dims[H5S_MAX_RANK];       /* The max. size of dataset dimensions */
 
    /* Buffered/cached information for types of raw data storage*/
    struct {
        H5D_rdcdc_t     contig;         /* Information about contiguous data */
                                        /* (Note that the "contig" cache
                                         * information can be used by a chunked
                                         * dataset in certain circumstances)
                                         */
        H5D_rdcc_t      chunk;          /* Information about chunked data */
    } cache;
 
    H5D_append_flush_t   append_flush;   /* Append flush property information */
    char                *extfile_prefix; /* expanded external file prefix */
    char                *vds_prefix;     /* expanded vds prefix */
};
 
struct H5D_t {
    H5O_loc_t           oloc;           /* Object header location       */
    H5G_name_t          path;           /* Group hierarchy path         */
    H5D_shared_t        *shared;        /* cached information from file */
};
 
/* Enumerated type for allocating dataset's storage */
typedef enum {
    H5D_ALLOC_CREATE,           /* Dataset is being created */
    H5D_ALLOC_OPEN,             /* Dataset is being opened */
    H5D_ALLOC_EXTEND,           /* Dataset's dataspace is being extended */
    H5D_ALLOC_WRITE             /* Dataset is being extended */
} H5D_time_alloc_t;
 
 
/* Typedef for dataset creation operation */
typedef struct {
    hid_t type_id;              /* Datatype for dataset */
    const H5S_t *space;         /* Dataspace for dataset */
    hid_t dcpl_id;              /* Dataset creation property list */
    hid_t dapl_id;              /* Dataset access property list */
} H5D_obj_create_t;
 
/* Typedef for filling a buffer with a fill value */
typedef struct H5D_fill_buf_info_t {
    H5MM_allocate_t fill_alloc_func;    /* Routine to call for allocating fill buffer */
    void        *fill_alloc_info;       /* Extra info for allocation routine */
    H5MM_free_t fill_free_func;         /* Routine to call for freeing fill buffer */
    void        *fill_free_info;        /* Extra info for free routine */
    H5T_path_t *fill_to_mem_tpath;      /* Datatype conversion path for converting the fill value to the memory buffer */
    H5T_path_t *mem_to_dset_tpath;      /* Datatype conversion path for converting the memory buffer to the dataset elements */
    const H5O_fill_t *fill;             /* Pointer to fill value */
    void       *fill_buf;               /* Fill buffer */
    size_t      fill_buf_size;          /* Size of fill buffer */
    hbool_t     use_caller_fill_buf;    /* Whether the caller provided the fill buffer */
    void       *bkg_buf;                /* Background conversion buffer */
    size_t      bkg_buf_size;           /* Size of background buffer */
    H5T_t      *mem_type;               /* Pointer to memory datatype */
    const H5T_t *file_type;             /* Pointer to file datatype */
    hid_t       mem_tid;                /* ID for memory version of disk datatype */
    hid_t       file_tid;               /* ID for disk datatype */
    size_t      mem_elmt_size, file_elmt_size;       /* Size of element in memory and on disk */
    size_t      max_elmt_size;          /* Max. size of memory or file datatype */
    size_t      elmts_per_buf;          /* # of elements that fit into a buffer */
    hbool_t     has_vlen_fill_type;     /* Whether the datatype for the fill value has a variable-length component */
} H5D_fill_buf_info_t;
 
 
/*****************************/
/* Package Private Variables */
/*****************************/
 
/* Storage layout class I/O operations */
H5_DLLVAR const H5D_layout_ops_t H5D_LOPS_CONTIG[1];
H5_DLLVAR const H5D_layout_ops_t H5D_LOPS_EFL[1];
H5_DLLVAR const H5D_layout_ops_t H5D_LOPS_COMPACT[1];
H5_DLLVAR const H5D_layout_ops_t H5D_LOPS_CHUNK[1];
H5_DLLVAR const H5D_layout_ops_t H5D_LOPS_VIRTUAL[1];
 
/* Chunked layout operations */
H5_DLLVAR const H5D_chunk_ops_t H5D_COPS_BTREE[1];
H5_DLLVAR const H5D_chunk_ops_t H5D_COPS_NONE[1];
H5_DLLVAR const H5D_chunk_ops_t H5D_COPS_SINGLE[1];
H5_DLLVAR const H5D_chunk_ops_t H5D_COPS_EARRAY[1];
H5_DLLVAR const H5D_chunk_ops_t H5D_COPS_FARRAY[1];
H5_DLLVAR const H5D_chunk_ops_t H5D_COPS_BT2[1];
 
/* The v2 B-tree class for indexing chunked datasets with >1 unlimited dimensions */
H5_DLLVAR const H5B2_class_t H5D_BT2[1];
H5_DLLVAR const H5B2_class_t H5D_BT2_FILT[1];
 
/*  Array of versions for Layout */
H5_DLLVAR const unsigned H5O_layout_ver_bounds[H5F_LIBVER_NBOUNDS];
 
 
/******************************/
/* Package Private Prototypes */
/******************************/
 
H5_DLL H5D_t *H5D__create(H5F_t *file, hid_t type_id, const H5S_t *space,
    hid_t dcpl_id, hid_t dapl_id);
H5_DLL H5D_t *H5D__create_named(const H5G_loc_t *loc, const char *name,
    hid_t type_id, const H5S_t *space, hid_t lcpl_id, hid_t dcpl_id,
    hid_t dapl_id);
H5_DLL H5D_t *H5D__open_name(const H5G_loc_t *loc, const char *name, hid_t dapl_id);
H5_DLL hid_t H5D__get_space(const H5D_t *dset);
H5_DLL hid_t H5D__get_type(const H5D_t *dset);
H5_DLL herr_t H5D__get_space_status(const H5D_t *dset, H5D_space_status_t *allocation);
H5_DLL herr_t H5D__alloc_storage(const H5D_io_info_t *io_info, H5D_time_alloc_t time_alloc, hbool_t full_overwrite, hsize_t old_dim[]);
H5_DLL herr_t H5D__get_storage_size(const H5D_t *dset, hsize_t *storage_size);
H5_DLL herr_t H5D__get_chunk_storage_size(H5D_t *dset, const hsize_t *offset, hsize_t *storage_size);
H5_DLL herr_t H5D__get_num_chunks(const H5D_t *dset, const H5S_t *space, hsize_t *nchunks);
H5_DLL herr_t H5D__get_chunk_info(const H5D_t *dset, const H5S_t *space, hsize_t chk_idx, hsize_t *coord, unsigned *filter_mask, haddr_t *offset, hsize_t *size);
H5_DLL herr_t H5D__get_chunk_info_by_coord(const H5D_t *dset, const hsize_t *coord, unsigned *filter_mask, haddr_t *addr, hsize_t *size);
H5_DLL haddr_t H5D__get_offset(const H5D_t *dset);
H5_DLL herr_t H5D__vlen_get_buf_size(H5D_t *dset, hid_t type_id, hid_t space_id, hsize_t *size);
H5_DLL herr_t H5D__vlen_get_buf_size_gen(H5VL_object_t *vol_obj, hid_t type_id, hid_t space_id, hsize_t *size);
H5_DLL herr_t H5D__check_filters(H5D_t *dataset);
H5_DLL herr_t H5D__set_extent(H5D_t *dataset, const hsize_t *size);
H5_DLL herr_t H5D__flush_sieve_buf(H5D_t *dataset);
H5_DLL herr_t H5D__flush_real(H5D_t *dataset);
H5_DLL herr_t H5D__flush(H5D_t *dset, hid_t dset_id);
H5_DLL herr_t H5D__mark(const H5D_t *dataset, unsigned flags);
H5_DLL herr_t H5D__refresh(hid_t dset_id, H5D_t *dataset);
 
/* To convert a dataset's chunk indexing type to v1 B-tree */
H5_DLL herr_t H5D__format_convert(H5D_t *dataset);
 
/* Internal I/O routines */
H5_DLL herr_t H5D__read(H5D_t *dataset, hid_t mem_type_id,
    const H5S_t *mem_space, const H5S_t *file_space, void *buf/*out*/);
H5_DLL herr_t H5D__write(H5D_t *dataset, hid_t mem_type_id,
    const H5S_t *mem_space, const H5S_t *file_space, const void *buf);
 
/* Functions that perform direct serial I/O operations */
H5_DLL herr_t H5D__select_read(const H5D_io_info_t *io_info,
    const H5D_type_info_t *type_info,
    hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space);
H5_DLL herr_t H5D__select_write(const H5D_io_info_t *io_info,
    const H5D_type_info_t *type_info,
    hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space);
 
/* Functions that perform scatter-gather serial I/O operations */
H5_DLL herr_t H5D__scatter_mem(const void *_tscat_buf, H5S_sel_iter_t *iter,
    size_t nelmts, void *_buf);
H5_DLL size_t H5D__gather_mem(const void *_buf, H5S_sel_iter_t *iter,
    size_t nelmts, void *_tgath_buf/*out*/);
H5_DLL herr_t H5D__scatgath_read(const H5D_io_info_t *io_info,
    const H5D_type_info_t *type_info,
    hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space);
H5_DLL herr_t H5D__scatgath_write(const H5D_io_info_t *io_info,
    const H5D_type_info_t *type_info,
    hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space);
 
/* Functions that operate on dataset's layout information */
H5_DLL herr_t H5D__layout_set_io_ops(const H5D_t *dataset);
H5_DLL size_t H5D__layout_meta_size(const H5F_t *f, const H5O_layout_t *layout,
    hbool_t include_compact_data);
H5_DLL herr_t H5D__layout_set_version(H5F_t *f, H5O_layout_t *layout);
H5_DLL herr_t H5D__layout_set_latest_indexing(H5O_layout_t *layout,
    const H5S_t *space, const H5D_dcpl_cache_t *dcpl_cache);
H5_DLL herr_t H5D__layout_oh_create(H5F_t *file, H5O_t *oh, H5D_t *dset,
    hid_t dapl_id);
H5_DLL herr_t H5D__layout_oh_read(H5D_t *dset, hid_t dapl_id,
    H5P_genplist_t *plist);
H5_DLL herr_t H5D__layout_oh_write(const H5D_t *dataset, H5O_t *oh, unsigned update_flags);
 
/* Functions that operate on contiguous storage */
H5_DLL herr_t H5D__contig_alloc(H5F_t *f, H5O_storage_contig_t *storage);
H5_DLL hbool_t H5D__contig_is_space_alloc(const H5O_storage_t *storage);
H5_DLL hbool_t H5D__contig_is_data_cached(const H5D_shared_t *shared_dset);
H5_DLL herr_t H5D__contig_fill(const H5D_io_info_t *io_info);
H5_DLL herr_t H5D__contig_read(H5D_io_info_t *io_info, const H5D_type_info_t *type_info,
    hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space,
    H5D_chunk_map_t *fm);
H5_DLL herr_t H5D__contig_write(H5D_io_info_t *io_info, const H5D_type_info_t *type_info,
    hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space,
    H5D_chunk_map_t *fm);
H5_DLL herr_t H5D__contig_copy(H5F_t *f_src, const H5O_storage_contig_t *storage_src,
    H5F_t *f_dst, H5O_storage_contig_t *storage_dst, H5T_t *src_dtype,
    H5O_copy_t *cpy_info);
H5_DLL herr_t H5D__contig_delete(H5F_t *f, const H5O_storage_t *store);
 
/* Functions that operate on chunked dataset storage */
H5_DLL htri_t H5D__chunk_cacheable(const H5D_io_info_t *io_info, haddr_t caddr,
    hbool_t write_op);
H5_DLL herr_t H5D__chunk_create(const H5D_t *dset /*in,out*/);
H5_DLL herr_t H5D__chunk_set_info(const H5D_t *dset);
H5_DLL hbool_t H5D__chunk_is_space_alloc(const H5O_storage_t *storage);
H5_DLL hbool_t H5D__chunk_is_data_cached(const H5D_shared_t *shared_dset);
H5_DLL herr_t H5D__chunk_lookup(const H5D_t *dset, const hsize_t *scaled,
    H5D_chunk_ud_t *udata);
H5_DLL herr_t H5D__chunk_allocated(const H5D_t *dset, hsize_t *nbytes);
H5_DLL herr_t H5D__chunk_allocate(const H5D_io_info_t *io_info, hbool_t full_overwrite, hsize_t old_dim[]);
H5_DLL herr_t H5D__chunk_file_alloc(const H5D_chk_idx_info_t *idx_info, const H5F_block_t *old_chunk,
    H5F_block_t *new_chunk, hbool_t *need_insert, const hsize_t *scaled);
H5_DLL herr_t H5D__chunk_update_old_edge_chunks(H5D_t *dset, hsize_t old_dim[]);
H5_DLL herr_t H5D__chunk_prune_by_extent(H5D_t *dset, const hsize_t *old_dim);
H5_DLL herr_t H5D__chunk_set_sizes(H5D_t *dset);
#ifdef H5_HAVE_PARALLEL
H5_DLL herr_t H5D__chunk_addrmap(const H5D_io_info_t *io_info, haddr_t chunk_addr[]);
#endif /* H5_HAVE_PARALLEL */
H5_DLL herr_t H5D__chunk_update_cache(H5D_t *dset);
H5_DLL herr_t H5D__chunk_copy(H5F_t *f_src, H5O_storage_chunk_t *storage_src,
    H5O_layout_chunk_t *layout_src, H5F_t *f_dst, H5O_storage_chunk_t *storage_dst,
    const H5S_extent_t *ds_extent_src, const H5T_t *dt_src,
    const H5O_pline_t *pline_src, H5O_copy_t *cpy_info);
H5_DLL herr_t H5D__chunk_bh_info(const H5O_loc_t *loc, H5O_t *oh,
    H5O_layout_t *layout, hsize_t *btree_size);
H5_DLL herr_t H5D__chunk_dump_index(H5D_t *dset, FILE *stream);
H5_DLL herr_t H5D__chunk_delete(H5F_t *f, H5O_t *oh, H5O_storage_t *store);
H5_DLL herr_t H5D__get_offset_copy(const H5D_t *dset, const hsize_t *offset, hsize_t *offset_copy);
H5_DLL herr_t H5D__chunk_direct_write(const H5D_t *dset, uint32_t filters,
         hsize_t *offset, uint32_t data_size, const void *buf);
H5_DLL herr_t H5D__chunk_direct_read(const H5D_t *dset, hsize_t *offset,
         uint32_t *filters, void *buf);
#ifdef H5D_CHUNK_DEBUG
H5_DLL herr_t H5D__chunk_stats(const H5D_t *dset, hbool_t headers);
#endif /* H5D_CHUNK_DEBUG */
 
/* format convert */
H5_DLL herr_t H5D__chunk_format_convert(H5D_t *dset, H5D_chk_idx_info_t *idx_info, H5D_chk_idx_info_t *new_idx_info);
 
/* Functions that operate on compact dataset storage */
H5_DLL herr_t H5D__compact_fill(const H5D_t *dset);
H5_DLL herr_t H5D__compact_copy(H5F_t *f_src, H5O_storage_compact_t *storage_src,
    H5F_t *f_dst, H5O_storage_compact_t *storage_dst, H5T_t *src_dtype,
    H5O_copy_t *cpy_info);
 
/* Functions that operate on virtual dataset storage */
H5_DLL herr_t H5D__virtual_store_layout(H5F_t *f, H5O_layout_t *layout);
H5_DLL herr_t H5D__virtual_copy_layout(H5O_layout_t *layout);
H5_DLL herr_t H5D__virtual_set_extent_unlim(const H5D_t *dset);
H5_DLL herr_t H5D__virtual_reset_layout(H5O_layout_t *layout);
H5_DLL herr_t H5D__virtual_delete(H5F_t *f, H5O_storage_t *storage);
H5_DLL herr_t H5D__virtual_copy(H5F_t *f_src, H5O_layout_t *layout_dst);
H5_DLL herr_t H5D__virtual_init(H5F_t *f, const H5D_t *dset, hid_t dapl_id);
H5_DLL hbool_t H5D__virtual_is_space_alloc(const H5O_storage_t *storage);
H5_DLL herr_t H5D__virtual_hold_source_dset_files(const H5D_t *dset,
    H5D_virtual_held_file_t **head);
H5_DLL herr_t H5D__virtual_refresh_source_dsets(H5D_t *dset);
H5_DLL herr_t H5D__virtual_release_source_dset_files(H5D_virtual_held_file_t *head);
 
/* Functions that operate on EFL (External File List)*/
H5_DLL hbool_t H5D__efl_is_space_alloc(const H5O_storage_t *storage);
H5_DLL herr_t H5D__efl_bh_info(H5F_t *f, H5O_efl_t *efl, hsize_t *heap_size);
 
/* Functions that perform fill value operations on datasets */
H5_DLL herr_t H5D__fill(const void *fill, const H5T_t *fill_type, void *buf,
    const H5T_t *buf_type, const H5S_t *space);
H5_DLL herr_t H5D__fill_init(H5D_fill_buf_info_t *fb_info, void *caller_fill_buf,
    H5MM_allocate_t alloc_func, void *alloc_info,
    H5MM_free_t free_func, void *free_info,
    const H5O_fill_t *fill, const H5T_t *dset_type, hid_t dset_type_id,
    size_t nelmts, size_t min_buf_size);
H5_DLL herr_t H5D__fill_refill_vl(H5D_fill_buf_info_t *fb_info, size_t nelmts);
H5_DLL herr_t H5D__fill_term(H5D_fill_buf_info_t *fb_info);
 
#ifdef H5_HAVE_PARALLEL
 
#ifdef H5S_DEBUG
#ifndef H5Dmpio_DEBUG
#define H5Dmpio_DEBUG
#endif /*H5Dmpio_DEBUG*/
#endif/*H5S_DEBUG*/
/* MPI-IO function to read, it will select either regular or irregular read */
H5_DLL herr_t H5D__mpio_select_read(const H5D_io_info_t *io_info,
    const H5D_type_info_t *type_info,
    hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space);
 
/* MPI-IO function to write, it will select either regular or irregular read */
H5_DLL herr_t H5D__mpio_select_write(const H5D_io_info_t *io_info,
    const H5D_type_info_t *type_info,
    hsize_t nelmts, const H5S_t *file_space, const H5S_t *mem_space);
 
/* MPI-IO functions to handle contiguous collective IO */
H5_DLL herr_t H5D__contig_collective_read(H5D_io_info_t *io_info,
    const H5D_type_info_t *type_info, hsize_t nelmts, const H5S_t *file_space,
    const H5S_t *mem_space, H5D_chunk_map_t *fm);
H5_DLL herr_t H5D__contig_collective_write(H5D_io_info_t *io_info,
    const H5D_type_info_t *type_info, hsize_t nelmts, const H5S_t *file_space,
    const H5S_t *mem_space, H5D_chunk_map_t *fm);
 
/* MPI-IO functions to handle chunked collective IO */
H5_DLL herr_t H5D__chunk_collective_read(H5D_io_info_t *io_info,
    const H5D_type_info_t *type_info, hsize_t nelmts, const H5S_t *file_space,
    const H5S_t *mem_space, H5D_chunk_map_t *fm);
H5_DLL herr_t H5D__chunk_collective_write(H5D_io_info_t *io_info,
    const H5D_type_info_t *type_info, hsize_t nelmts, const H5S_t *file_space,
    const H5S_t *mem_space, H5D_chunk_map_t *fm);
 
/* MPI-IO function to check if a direct I/O transfer is possible between
 * memory and the file */
H5_DLL htri_t H5D__mpio_opt_possible(const H5D_io_info_t *io_info,
    const H5S_t *file_space, const H5S_t *mem_space,
    const H5D_type_info_t *type_info);
 
#endif /* H5_HAVE_PARALLEL */
 
/* Testing functions */
#ifdef H5D_TESTING
H5_DLL herr_t H5D__layout_version_test(hid_t did, unsigned *version);
H5_DLL herr_t H5D__layout_contig_size_test(hid_t did, hsize_t *size);
H5_DLL herr_t H5D__layout_compact_dirty_test(hid_t did, hbool_t *dirty);
H5_DLL herr_t H5D__layout_idx_type_test(hid_t did, H5D_chunk_index_t *idx_type);
H5_DLL herr_t H5D__layout_type_test(hid_t did, H5D_layout_t *layout_type);
H5_DLL herr_t H5D__current_cache_size_test(hid_t did, size_t *nbytes_used, int *nused);
#endif /* H5D_TESTING */
 
#endif /*_H5Dpkg_H*/